respected sir! sorry for disturbing thank you for provided guide line
i used following perameters... gromacs 5.0.7 force field 43A1p (which is downloaded from given gromacs web) problem: after 1ns i stop the simulation ang generate PDB of my protein. i found that my TPO is removed from PDB and in SEP no change occure i am surprised what happens with TPO??/ kindly provide me guide line what happen with TPO thank you mehreen jan -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
