and also this one: http://www3.mpibpc.mpg.de/groups/de_groot/cecam2015/peptide_mutation/
On 3/31/16, SAKO MIRZAIE <sako.bioc...@gmail.com> wrote: > hi > you can do MD simulation and compute free energy of folding, > individually. for detect the folding frame or structure, use have to > regard to RMSD. please look at the following webpage: > > http://www3.mpibpc.mpg.de/groups/de_groot/compbio2/p8/index.html > > On 3/31/16, Tushar Ranjan Moharana <tusharranjanmohar...@gmail.com> wrote: >> Hi SAKO MIRZAIE, >> Thanks for your reply. But how can we calculate difference in folding >> free >> energy by doing 2 separate simulations? Please clarify (at least give >> some >> hints or references). >> >> Thanks a lot. >> >> "A society with free knowledge is better than a society with free food" >> -- >> Tushar Ranjan Moharana >> B. Tech, NIT Warangal >> Ph D Student, CCMB >> -- >> Gromacs Users mailing list >> >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before >> posting! >> >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> >> * For (un)subscribe requests visit >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send >> a >> mail to gmx-users-requ...@gromacs.org. >> > > > -- > *********************************************** > sako mirzaie > PhD in biochemistry, science faculty, Islamic azad university of > sanandaj, sanandaj, Iran > http://www.iausdj.ac.ir/fa/fa-info.aspx?p=s.mirzaie > > http://www.iausdj.ac.ir/en/en.aspx?p=s.mirzaie > > http://scholar.google.com/citations?user=viwZvVAAAAAJ&hl=en > > http://www.scopus.com/authid/detail.url?authorId=54886431500 > > http://www.ncbi.nlm.nih.gov/pubmed/?term=sako+mirzaie > https://www.researchgate.net/profile/Sako_Mirzaie/publications/ > -- *********************************************** sako mirzaie PhD in biochemistry, science faculty, Islamic azad university of sanandaj, sanandaj, Iran http://www.iausdj.ac.ir/fa/fa-info.aspx?p=s.mirzaie http://www.iausdj.ac.ir/en/en.aspx?p=s.mirzaie http://scholar.google.com/citations?user=viwZvVAAAAAJ&hl=en http://www.scopus.com/authid/detail.url?authorId=54886431500 http://www.ncbi.nlm.nih.gov/pubmed/?term=sako+mirzaie https://www.researchgate.net/profile/Sako_Mirzaie/publications/ -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
