hi Its hydrophobic effect, Nikhil. And you can make index of hydrophobic groups in your protein, then calculate distance between them.
On Thu, May 12, 2016 at 11:03 PM, Nikhil Maroli <scinik...@gmail.com> wrote: > Dear all, > > is there any option in gromacs to study the hydrophobic interaction between > the two molecule over the simulation time ! > -- > Ragards, > Nikhil Maroli > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
