Dear all, I am trying to use g_cluster protocol to get representative snapshots of the simulations. I have concatenated 9 set of simulations and run g_cluster for the same. The result shows a total of 198 clusters.
Is this correct? Following is the command I have used: g_cluster -s models.gro -f concatenated.xtc -dm rmsd-matrix.xpm -o clusters.xpm -sz cluster_size.xvg -clid cluster-id-over-time.xvg -cl all_clusters.pdb -cutoff 0.2 -method gromos Thanks in advance. Regards, Sapna. Sapna Mayuri Borah c/o Dr. A. N. Jha Research student Tezpur University, India -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
