Dear Nikhil Maroli, I think that the error comes from the incorrect format of topology file. Therefore, I would like to create correct topology file for three molecules. The system I used is a customized coarse-grained system to which I mapped the atomistic system. Therefore, I need to modify the topology file after using pdb2gmx.
Thank you. Best regards, Changwoon Jang On Wed, Aug 31, 2016 at 12:11 PM, Nikhil Maroli <scinik...@gmail.com> wrote: > It is impossible to make any comments without knowing the simulation > details. I hope it will help , if not provide the full details > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/ > gmx-tutorials/complex/02_topology.html > -- > Gromacs Users mailing list > > * Please search the archive at http://www.gromacs.org/ > Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Best regards, Changwoon Jang, Postdoctoral Research Fellow Department of Chemical & Biological Engineering, Drexel University 3141 Chestnut Street, Philadelphia, PA 19104 Voice: (662) 617-2267 E-mail: cj...@drexel.edu -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.