Positive values of potential energy and I am in vacuo.
Mishelle


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-------- Original message --------
From: Justin Lemkul <jalem...@vt.edu>
Date: 11/03/2016 08:43 (GMT-05:00)
To: gmx-us...@gromacs.org
Subject: Re: [gmx-users] Energy Minimization



On 11/2/16 9:40 PM, Mishelle Oña wrote:
> Hello
>
> I have a question about energy minimization tool. I am modelling a polymer 
> and I use a force field I have developed. I have run a EM and got positive 
> values. Can you help me with this?
>

Positive values for what?  Are you in vacuo or in solvent?

-Justin

--
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
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University of Maryland, Baltimore
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jalem...@outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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