Dear gmx users, I want to simulation peptide on membrane. Initial structure was created by Charmm-gui, and Charmm-gui gave appropriate mdp files. I have a question about grompp's note.
After energy minimization, I want to NVT equilibration, and grompp gave me one note as a following ****** The Berendsen thermostat does not generate the correct kinetic energy distribution. You might want to consider using the V-rescale thermostat. ****** How is V-rescale thermostat useful for the simulation? Mijiddorj -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
