Hi, There's not enough information here for anyone to help you (and you can't attach files to send to the list). Why didn't you find the generated topologies useful? Why do you care about CYSH?
Mark On Mon, Jan 23, 2017 at 10:46 AM RAHUL SURESH <drrahulsur...@gmail.com> wrote: > I have tried Ligpargen to generate topology for a molecule and I dont find > it useful. And totally unaware how to use topolgen or topolbuild. > > Now I am trying to craft my topology manually. I would like to get some > guidances. > > [ CYSH ] > [ atoms ] > N opls_238 -0.500 1 > H opls_241 0.300 1 > CA opls_224B 0.140 1 > HA opls_140 0.060 1 > CB opls_206 0.060 2 > HB1 opls_140 0.060 2 > HB2 opls_140 0.060 2 > SG opls_200 -0.335 3 > HG opls_204 0.155 3 > C opls_235 0.500 4 > O opls_236 -0.500 4 > > here how to determine these forcefields? > > > > > NOTE: I have attached the itp file generated online. > -- > *Regards,* > *Rahul Suresh* > *Research Scholar* > *Bharathiar University* > *Coimbatore* > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
