Hello, I ran a energy minimization followed by nvt, npt, md simulation...and during analysis, if i look my .gro file structure in vmd and i write in tkconsole as pbc box and see that *some of the molecules are not inside the box, they have been outside the box*, is there anything wrong..?? how can i knw about this..?? any influence of PBC....etc.,
how can i clear all these doubts..?? is there any prescribed book/references for it...thn it would help a lot... -- With Best Regards, DILIP.H.N Ph.D Student <https://mailtrack.io/> Sent with Mailtrack <https://mailtrack.io/install?source=signature&lang=en&referral=cy16f01.di...@nitk.edu.in&idSignature=22> -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
