Lincs warning usually occurs for the system that not minimized. You can try to minimize your system before running the real simulation.
Other option would be use -maxwarn flag but please use it only if you know that these warnings are not important. > On 13 Apr 2017, at 11:10, Anshul Lahariya <anshullahariy...@gmail.com> wrote: > > This is a error that i got during mdrun. plzzz help.. > > > > Program: gmx mdrun, version 2016.2 > Source file: src/gromacs/mdlib/constr.cpp (line 167) > > Fatal error: > Too many LINCS warnings (1000) > If you know what you are doing you can adjust the lincs warning threshold in > your mdp file > or set the environment variable GMX_MAXCONSTRWARN to -1, > but normally it is better to fix the problem > > For more information and tips for troubleshooting, please check the GROMACS > website at http://www.gromacs.org/Documentation/Errors > ------------------------------------------------------- > [root@dhcppc58 AhpE_MSH]# Program: gmx mdrun, version 2016.2 > > > On Thu, Apr 13, 2017 at 12:06 PM, Anshul Lahariya < > anshullahariy...@gmail.com> wrote: > >> Thank u so much >> >> #Devashish Das >> >> >> On Thu, Apr 13, 2017 at 11:30 AM, Devashish_Das <dasdevashish...@gmail.com >>> wrote: >> >>> Please use to resume: >>> >>> gmx mdrun -v -deffnm 10ns -cpi 10ns.cpt >>> >>> >>> >>> >>> On Thu, Apr 13, 2017 at 11:12 AM, Anshul Lahariya < >>> anshullahariy...@gmail.com> wrote: >>> >>>> My md was running. Suddenly power supply was cuts due to some reason >>> and my >>>> my MD stops.. >>>> To continue my MD, I use command:- >>>> >>>> >>>> gmx mdrun -v -s 10ns.tpr -e 10ns.edr -g 10ns.log -10ns.xtc -cpi 10ns.cpt >>>> -cpo 10ns.cpt -append >>>> >>>> >>>> >>>> but shows error. >>>> >>>> >>>> Error in user input: >>>> Invalid command-line options >>>> Unknown command-line option -md_1_0.xtc >>>> >>>> For more information and tips for troubleshooting, please check the >>> GROMACS >>>> website at http://www.gromacs.org/Documentation/Errors >>>> ------------------------------------------------------- >>>> [root@dhcppc58 AhpE_MSH]# >>>> >>>> >>>> >>>> Plzz.. help me out.... >>>> -- >>>> Gromacs Users mailing list >>>> >>>> * Please search the archive at http://www.gromacs.org/ >>>> Support/Mailing_Lists/GMX-Users_List before posting! >>>> >>>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>>> >>>> * For (un)subscribe requests visit >>>> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or >>>> send a mail to gmx-users-requ...@gromacs.org. >>>> >>> >>> >>> >>> -- >>> >>> Regards, >>> >>> Devashish Das >>> -- >>> Gromacs Users mailing list >>> >>> * Please search the archive at http://www.gromacs.org/Support >>> /Mailing_Lists/GMX-Users_List before posting! >>> >>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> >>> * For (un)subscribe requests visit >>> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or >>> send a mail to gmx-users-requ...@gromacs.org. >>> >> >> > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a > mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.