hello rahul, can u tell me how to make movie??
On Fri, Apr 21, 2017 at 3:12 PM, João Henriques < joao.m.a.henriq...@gmail.com> wrote: > Plus, installing multiple version of the same software (e.g. gcc) is not > problematic at all *when done by someone that knows what he/she is doing*. > Furthermore, I completely disagree with Vytautas Rakeviius final advice. It > wouldn't cross anyone's mind to change OS in order to use a different gcc > version. That is ludicrous. I obviously don't recommend that an > inexperienced user should start compiling stuff blindly on their machine, > but that is just plain bad practice and impractical. > > But I digress, this is not really GROMACS related. > > A nice weekend to everyone! > João > > On Fri, Apr 21, 2017 at 11:21 AM, João Henriques < > joao.m.a.henriq...@gmail.com> wrote: > > > You have (at the very least) three solutions regarding the movie: > > > > [1] Use gmx trjconv (see http://manual.gromacs.org/documentation/5.1.4/ > > onlinehelp/gmx-trjconv.html) to generate a PDB file with the desired > > trajectory frames. Load and play it in PyMOL et voilà! > > > > [2] Install the GROMACS plugin for PyMOL, which will allow you (among > > other things) to directly read the trajectory files without having to > > resort to gmx trjconv (see https://pymolwiki.org/index. > php/GROMACS_Plugin > > ). > > > > [3] Use VMD which can read GROMACS trajectory output files straight out > of > > the box (see http://www.ks.uiuc.edu/Research/vmd/). > > > > For details regarding gmx trjconv please read the documentation. It is > > fairly trivial and only you know exactly what system you have at hand. > Some > > options will vary depending on that. > > > > - - - > > > > Regarding gcc, depending on your operating system you can either use a > > package manager to install the desired version of gcc or compile it > > yourself. After installing it don't forget to make sure GROMACS knows > where > > to search for it, using the -DCMAKE_C_COMPILER=/path/to/gcc flag when > > running cmake (and probably also -DCMAKE_CXX_COMPILER=/path/to/c++). > > These paths are obviously fictitious and need to be changed with the > right > > ones. > > > > Best regards, > > João > > > > On Fri, Apr 21, 2017 at 10:47 AM, Anshul Lahariya < > > anshullahariy...@gmail.com> wrote: > > > >> okkk. it's fine... > >> > >> > >> On Fri, Apr 21, 2017 at 1:06 PM, RAHUL SURESH <drrahulsur...@gmail.com> > >> wrote: > >> > >> > I am out > >> > Can I say that to u on Monday.) ? > >> > On Fri, 21 Apr 2017 at 10:28 AM, Anshul Lahariya < > >> > anshullahariy...@gmail.com> > >> > wrote: > >> > > >> > > yes rahul, i use pymol but dont know how to make movie > >> > > > >> > > > >> > > On Fri, Apr 21, 2017 at 10:09 AM, RAHUL SURESH < > >> drrahulsur...@gmail.com> > >> > > wrote: > >> > > > >> > > > You must use pymol > >> > > > > >> > > > > >> > > > On Fri, 21 Apr 2017 at 6:35 AM, Anshul Lahariya < > >> > > > anshullahariy...@gmail.com> > >> > > > wrote: > >> > > > > >> > > > > thanks rahul > >> > > > > > >> > > > > > >> > > > > and how to make md movie for 5ns by command.?? > >> > > > > > >> > > > > > >> > > > > On Thu, Apr 20, 2017 at 5:54 PM, RAHUL SURESH < > >> > drrahulsur...@gmail.com > >> > > > > >> > > > > wrote: > >> > > > > > >> > > > > > Yum apt-get gcc version > >> > > > > > Yum update > >> > > > > > Yum upgrade > >> > > > > > Yum install > >> > > > > > > >> > > > > > > >> > > > > > On Thu, 20 Apr 2017 at 5:23 PM, Mark Abraham < > >> > > mark.j.abra...@gmail.com > >> > > > > > >> > > > > > wrote: > >> > > > > > > >> > > > > > > Hi, > >> > > > > > > > >> > > > > > > That's a good question for google or the forums of your > >> operating > >> > > > > system, > >> > > > > > > not here. :-) > >> > > > > > > > >> > > > > > > Mark > >> > > > > > > > >> > > > > > > On Thu, 20 Apr 2017 12:42 Anshul Lahariya < > >> > > > anshullahariy...@gmail.com> > >> > > > > > > wrote: > >> > > > > > > > >> > > > > > > > hello, > >> > > > > > > > > >> > > > > > > > I want to change my gcc and want to install gcc version > >> later > >> > > than > >> > > > 5. > >> > > > > > > > what can i do so i can change the version of gcc to > >> gcc-4.9.4 > >> > > > > > > > -- > >> > > > > > > > Gromacs Users mailing list > >> > > > > > > > > >> > > > > > > > * Please search the archive at > >> > > > > > > > http://www.gromacs.org/Support/Mailing_Lists/GMX- > Users_List > >> > > before > >> > > > > > > > posting! > >> > > > > > > > > >> > > > > > > > * Can't post? Read http://www.gromacs.org/ > >> > Support/Mailing_Lists > >> > > > > > > > > >> > > > > > > > * For (un)subscribe requests visit > >> > > > > > > > > >> > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users > >> > > > > or > >> > > > > > > > send a mail to gmx-users-requ...@gromacs.org. > >> > > > > > > > > >> > > > > > > -- > >> > > > > > > Gromacs Users mailing list > >> > > > > > > > >> > > > > > > * Please search the archive at > >> > > > > > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List > >> > before > >> > > > > > > posting! > >> > > > > > > > >> > > > > > > * Can't post? Read http://www.gromacs.org/Support > >> /Mailing_Lists > >> > > > > > > > >> > > > > > > * For (un)subscribe requests visit > >> > > > > > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_ > >> > gmx-users > >> > > > or > >> > > > > > > send a mail to gmx-users-requ...@gromacs.org. > >> > > > > > > > >> > > > > > -- > >> > > > > > *Regards,* > >> > > > > > *Rahul Suresh* > >> > > > > > *Research Scholar* > >> > > > > > *Bharathiar University* > >> > > > > > *Coimbatore* > >> > > > > > -- > >> > > > > > Gromacs Users mailing list > >> > > > > > > >> > > > > > * Please search the archive at http://www.gromacs.org/ > >> > > > > > Support/Mailing_Lists/GMX-Users_List before posting! > >> > > > > > > >> > > > > > * Can't post? Read http://www.gromacs.org/ > Support/Mailing_Lists > >> > > > > > > >> > > > > > * For (un)subscribe requests visit > >> > > > > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx > >> -users > >> > > or > >> > > > > > send a mail to gmx-users-requ...@gromacs.org. > >> > > > > > > >> > > > > -- > >> > > > > Gromacs Users mailing list > >> > > > > > >> > > > > * Please search the archive at > >> > > > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List > >> before > >> > > > > posting! > >> > > > > > >> > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > > > > > >> > > > > * For (un)subscribe requests visit > >> > > > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx > >> -users > >> > or > >> > > > > send a mail to gmx-users-requ...@gromacs.org. > >> > > > > > >> > > > -- > >> > > > *Regards,* > >> > > > *Rahul Suresh* > >> > > > *Research Scholar* > >> > > > *Bharathiar University* > >> > > > *Coimbatore* > >> > > > -- > >> > > > Gromacs Users mailing list > >> > > > > >> > > > * Please search the archive at http://www.gromacs.org/ > >> > > > Support/Mailing_Lists/GMX-Users_List before posting! > >> > > > > >> > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > > > > >> > > > * For (un)subscribe requests visit > >> > > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_ > gmx-users > >> or > >> > > > send a mail to gmx-users-requ...@gromacs.org. > >> > > > > >> > > -- > >> > > Gromacs Users mailing list > >> > > > >> > > * Please search the archive at > >> > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > >> > > posting! > >> > > > >> > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > > > >> > > * For (un)subscribe requests visit > >> > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users > or > >> > > send a mail to gmx-users-requ...@gromacs.org. > >> > > > >> > -- > >> > *Regards,* > >> > *Rahul Suresh* > >> > *Research Scholar* > >> > *Bharathiar University* > >> > *Coimbatore* > >> > -- > >> > Gromacs Users mailing list > >> > > >> > * Please search the archive at http://www.gromacs.org/ > >> > Support/Mailing_Lists/GMX-Users_List before posting! > >> > > >> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > > >> > * For (un)subscribe requests visit > >> > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > >> > send a mail to gmx-users-requ...@gromacs.org. > >> > > >> -- > >> Gromacs Users mailing list > >> > >> * Please search the archive at http://www.gromacs.org/Support > >> /Mailing_Lists/GMX-Users_List before posting! > >> > >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > >> * For (un)subscribe requests visit > >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > >> send a mail to gmx-users-requ...@gromacs.org. > >> > > > > > -- > Gromacs Users mailing list > > * Please search the archive at http://www.gromacs.org/ > Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.