Dear GROMACS users, I want to insert my molecule of interest in a simulation box at specific positions, specified by a dat file.
Now, when I run insert-molecules, I find that on "certain occasions" (yes, it doesn't happen always.), the program also inserts the molecule at the origin [0 0 0]. It seems that it is appending the input coordinates of my molecule, provided with -ci, to the final coordinate file, something which should not happen. Is this behavior known? Of course, it is trivial to remove the extra coordinates, but it becomes an effort if a large number of systems need to be generated. Thank you. Regards, Abhishek Acharya Research Associate, Department of Molecular Nutrition CSIR-Central Food Technological Research Institute, Mysuru-570020 -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
