Seems to be an old problem. You should read this https://mailman-1.sys.kth.se/pipermail/gromacs.org_gmx-users/2015-May/097312.html
> After following Mario's link, I still could not solve it. The same problem > happens. > > > My command line is: > > > lee@ubuntu:~/Jef/gromacs/gromacs-5.1.4/build$ cmake .. > -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON > -- The CXX compiler identification is GNU 4.8.4 > -- Check for working CXX compiler: /usr/bin/c++ > -- Check for working CXX compiler: /usr/bin/c++ -- works > -- Detecting CXX compiler ABI info > -- Detecting CXX compiler ABI info - done > -- No compatible CUDA toolkit found (v4.0+), disabling native GPU > acceleration > -- Performing Test CXXFLAGS_PRAGMA > -- Performing Test CXXFLAGS_PRAGMA - Success > -- Performing Test CXXFLAGS_WARN > -- Performing Test CXXFLAGS_WARN - Success > -- Performing Test CXXFLAGS_WARN_EXTRA > -- Performing Test CXXFLAGS_WARN_EXTRA - Success > -- Performing Test CXXFLAGS_WARN_UNDEF > -- Performing Test CXXFLAGS_WARN_UNDEF - Success > -- Performing Test CXXFLAGS_WARN_REL > -- Performing Test CXXFLAGS_WARN_REL - Success > -- Performing Test CXXFLAGS_EXCESS_PREC > -- Performing Test CXXFLAGS_EXCESS_PREC - Success > -- Performing Test CXXFLAGS_COPT > -- Performing Test CXXFLAGS_COPT - Success > -- Performing Test CXXFLAGS_NOINLINE > -- Performing Test CXXFLAGS_NOINLINE - Success > CMake Warning at cmake/gmxTestCompilerProblems.cmake:44 (message): > The versions of the C and C++ compilers do not match (4.8.2 and 4.8.4, > respectively). Mixing different C/C++ compilers can cause problems. > Call Stack (most recent call first): > CMakeLists.txt:310 (gmx_test_compiler_problems) > > > > > CMake Error at cmake/gmxManageSimd.cmake:67 (message): > Cannot find AVX compiler flag. Use a newer compiler, or choose SSE4.1 > SIMD > (slower). > Call Stack (most recent call first): > cmake/gmxManageSimd.cmake:261 > (gmx_give_fatal_error_when_simd_support_not_found) > CMakeLists.txt:648 (gmx_manage_simd) > > > > > -- Configuring incomplete, errors occurred! > See also > "/home/lee/Jef/gromacs/gromacs-5.1.4/build/CMakeFiles/CMakeOutput.log". > See also > "/home/lee/Jef/gromacs/gromacs-5.1.4/build/CMakeFiles/CMakeError.log". > > > > > > ------------------ Original ------------------ > From: "mario";<[email protected]>; > Date: Thu, Jun 1, 2017 02:44 PM > To: "gmx-users"<[email protected]>; > Cc: "gromacs.org_gmx-users"<[email protected]>; > "ZHANG Cheng"<[email protected]>; > Subject: Re: [gmx-users] "cmake" failed to install > > > > Dear Cheng: > I solved that problem by following step by step instructions of the next > page: > > https://bioinformaticsreview.com/20151126/how-to-install-gromacs-5-x-x-on-linux-ubuntu-14-04-lts/ > > Best Regards > Mario Campo > Dpto Física - UNLPam > La Pampa Argentina > >> Dear Gromacs, >> I did the below on Ubuntu 14.04: >> >> >> tar xfz gromacs-5.1.4.tar.gz >> cd gromacs-5.1.4 >> mkdir build >> cd build >> >> >> >> Then, I got error message when running: >> cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON >> >> >> The error log files can be found here: >> https://1drv.ms/f/s!AjIs-W_id1LzobZfGThismE4so_SRQ >> >> >> Can I ask how to solve this? >> >> >> Thank you. >> >> >> Yours sincerely >> Cheng >> -- >> Gromacs Users mailing list >> >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before >> posting! >> >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> >> * For (un)subscribe requests visit >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or >> send >> a mail to [email protected]. >> -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
