Hi, Your description is unclear - you seem to change whether a protein and a chain are the same thing, or not. So I don't know what you think the problem is :-)
Mark On Sun, Jul 2, 2017 at 5:18 PM Khadija Amine <kh.ami...@gmail.com> wrote: > Dear Gromacs users, > > I'm running a protein complex simulations with the gromacs software. > > My complex is two different proteins named chain A (1-166 aa) and chain B > (55-131)with 3 ions and one ligand. > > I have produced the topology for the every component of my complex using > pdb2gmx program. > > However, when I have visualised the resulted pdb file with pymol, I can see > the two displayed proteins but the amino acids sequence is not complete. I > can see the chain A and not the chain B. > > Please, how can I fix this issue? > Khadija > > *Khadija Amine* > Ph.D. Biology and Health > Biochemistry & Bioinformatics > Phone: 33339584 > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.