Hello, I have created my own rtp file which I want to use in conjunction with the OPLS force field. If I understand it correctly, the easiest way to get pdb2gmx to build my topology would be to copy my rtp file into the oplsaa.ff/ directory, and Gromacs looks for my molecule name inside anything with an *rtp extension, including my rtp file. However, I have no write permission to the oplsaa.ff/ directory of my Gromacs installation. How can I get pdb2gmx to search inside my rtp file when it's in a non-standard directory (e.g. in the current working directory)?
Thanks, Miguel -- *Dr. Miguel Caro* /Postdoctoral researcher/ Department of Electrical Engineering and Automation, and COMP Centre of Excellence in Computational Nanoscience Aalto University, Finland Personal email: *mcar...@gmail.com* Work: *miguel.c...@aalto.fi* Website: http://mcaroba.dyndns.org -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
