What is DA, and from your background knowledge of this force field, does it have suitable parameters or topologies for DA?
Mark On Mon, 31 Jul 2017 11:02 Souparno Adhikary <[email protected]> wrote: > Hi all, > > I was trying to simulate a protein-DNA complex using gromos54a7 forcefield. > The error comes as, > > Fatal error: > Residue 'DA' not found in residue topology database > > Clearly, it is not finding the DA residue in its database. How can I solve > this? > > Thanks, > > Souparno Adhikary, > CHPC Lab, > Department of Microbiology, > University of Calcutta. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to [email protected]. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
