On 8/2/17 2:38 PM, Alex wrote:
Huh. Most of my work has been with OPLS-AA, so I took that for granted.
Where would the actual charges be, then?


In the .rtp file, where residues are defined. Charges are not (and should not) necessarily be linked to atom types; they are a function of parametrized groups or molecules.

-Justin

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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
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jalem...@outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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