blockquote, div.yahoo_quoted { margin-left: 0 !important; border-left:1px 
#715FFA solid !important; padding-left:1ex !important; background-color:white 
!important; }  Hi andrea
Thank you for replyYes i moved the speed control on the left but it wasnt 
affected. And now i went to graphical reprezentation and increased trajectory 
smoothing windows size but it was not ok too. It seems my protein has many 
aberrant bonds 

Sent from Yahoo Mail for iPhone


On Monday, August 7, 2017, 2:24 PM, Andrea Spitaleri <andrea.spital...@iit.it> 
wrote:

Hi

please refer to VMD guide/manual/mailing list. You have different 
options to "decrease" the motion:

1. in VMD Main there is a speed control, just move to left with mouse

or/and

2.  in Graphical Representations under Trajectory tab you can increase 
the number of "Trajectory Smoothing Window Size".

HTH

and


On 07/08/2017 11:38, farial tavakoli wrote:
>  blockquote, div.yahoo_quoted { margin-left: 0 !important; border-left:1px 
>#715FFA solid !important; padding-left:1ex !important; background-color:white 
>!important; }  Dear gromacs user
> I am trying to view .gro and .xtc files of my complex by VMD but when i load 
> first .gro and then .xtc files in vmd , it has so high motion , such that no 
> molecules are viewable. Would you please help me how can i view it?
> ThanksFarial
>
>
> Sent from Yahoo Mail for iPhone
>  

-- 
Andrea Spitaleri PhD
Computational mOdelling of NanosCalE and bioPhysical sysTems - CONCEPT Lab
ISTITUTO ITALIANO DI TECNOLOGIA
Via Morego 30, 16163 - Genova, Italy
https://iit.it/research/lines/computational-modelling-of-nanoscale-and-biophysical-systems
cell: +39 3485188790
https://iit.it/andrea-spitaleri
ORCID: http://orcid.org/0000-0003-3012-3557

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