Dear GROMACS users
I am trying to calculate radial density monomer density profiles with
respect to the COM distance for a system composed of polymer+drug in water.
I have used the following command according to gromacs online manual
gmx rdf -com -rdf mol_com -f md-nopbc.xtc -s md.tpr -n rdf.ndx -o
rdf_cl.xvg
but I get this error:
Program: gmx rdf, VERSION 5.1.3
Source file: src/gromacs/commandline/cmdlineparser.cpp (line 234)
Function: void gmx::CommandLineParser::parse(int*, char**)
Error in user input:
Invalid command-line options
Unknown command-line option -com
Unknown command-line option -rdf
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
any help will be appreciated.
Regards,
Farideh
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