Number of hydrogen bond depends on the nature of your drug. It can be zero, one or many.
On Thu, Aug 10, 2017 at 10:33 AM, saranya <saranyahone...@gmail.com> wrote: > Hi, > I have done protein-drug simulations for 100ns. While calculating the > hydrogen bond between the protein-drug complex I am getting only 2 hydrogen > bonds. > I just want to clarify that 2 hydrogen bonds mean very low, is it > acceptable to get this minimum number of bond formation for the protein > drug interaction? > > With Regards, > > *Saranya Vasudevan,* > > *Research Scholar,* > > *Molecular Quantum Mechanics Laboratory,* > > *Department of Physics,* > > *Bharathiar University,* > > *Coimbatore-46* > -- > Gromacs Users mailing list > > * Please search the archive at http://www.gromacs.org/ > Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.