Hi Justin Thank you so much with best Farial
From: Justin Lemkul <jalem...@vt.edu> To: gmx-us...@gromacs.org Sent: Monday, 14 August 2017, 16:35:58 Subject: Re: [gmx-users] ligand On 8/14/17 2:03 AM, farial tavakoli wrote: > Dear Justin > Thanks for your advice.Now I am trying to create a .gro file from the united > atom pdb structure file obtained from ATB by using :editconf -f xxx.pdb -o > xxx.gro > but faced to this warning: > WARNING: all CONECT records are ignored > would you please advice me how can i solve this problem? You don't. You don't need connectivity information from the PDB because it's all in the topology. This really shouldn't be a "warning," rather an informative note. -Justin -- ================================================== Justin A. Lemkul, Ph.D. Assistant Professor Virginia Tech Department of Biochemistry 303 Engel Hall 340 West Campus Dr. Blacksburg, VA 24061 jalem...@vt.edu | (540) 231-3129 http://www.biochem.vt.edu/people/faculty/JustinLemkul.html ================================================== -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.