On 8/15/17 9:14 PM, Mohammad Zahidul Hossain Khan wrote:
Dear Sir

I am trying to simulate protein_ligand complex using epsilon = 4 and it is
giving the below error


What is epsilon = 4?

*2 particles communicated to PME rank 4 are more than 2/3 times the cut-off
out of the domain decomposition cell of their charge group in dimension x*

I have no idea how to solve this problem


Have you Googled it, or gone to the GROMACS error page, where lots of advice lives? ;)

-Justin

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Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry

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