Hi, Please check the link. http://manual.gromacs.org/programs/gmx-editconf.html Best, Kunal
On Tue, Oct 31, 2017 at 3:22 AM, vijayakumar gosu <[email protected] > wrote: > Hello all, > > > I have performed simulations for Protein RNA complex around 1500 residues. > I have used triclinic box with 1.4 nm distance from the edge of the box to > protein as triclinic box takes less number of water molecules (~100000) > compared to other boxes . The simulation results looks fine and i am able > to answer the biological question. however i have not seen many > publications using triclinic box. Hence i am bit skeptical and like to > know there is any criteria to choose the simulation box. > > > Thanks > -- > Gromacs Users mailing list > > * Please search the archive at http://www.gromacs.org/ > Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to [email protected]. > -- --------------------------------------------------------- Regards. Kunal Dutta Senior Research Scholar Microbiology and Immunology Laboratory Department of Human Physiology with Community Health Vidyasagar University, Medinipur-721102 West Bengal, India. Cell: 9126181933 -------------------------------------------- ORCID ID: 0000-0002-0818-8787 RG: https://www.researchgate.net/profile/Kunal_Dutta2 GS: https://scholar.google.co.in/citations?user=ULby284AAAAJ&hl=en -- ************************************************************************************************************ *CONFIDENTIALITY NOTICE* This communication (including any attachment/s) is intended only for the use of the addressee(s) and contains information that is PRIVILEGED AND CONFIDENTIAL. Unauthorized reading, dissemination, distribution, or copying of this communication is prohibited. *DISCLAIMER* Any views or opinions presented in this email are solely those of the author and do not necessarily represent those the University. WARNING:- This communication, including any attachments, may not be free of viruses, interceptions or interference, and may not be compatible with your systems. You should carry out your own virus checks before opening any attachment to this e-mail. The sender of this e-mail and Vidyasagar University shall not be liable for any damage that you may sustain as a result of viruses, incompleteness of this message, a delay in receipt of this message or computer problems experienced. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
