Hi, Yes those will affect what configurations are sampled, but not the LJ component of the energy of the configurations.
Mark On Sat, 18 Nov 2017 23:54 Alex <nedoma...@gmail.com> wrote: > And the things that affect the motion of the things with LJ interactions. > :) > > Alex > > > On 11/18/2017 3:49 PM, Mark Abraham wrote: > > Hi, > > > > Only things with LJ interactions can influence the LJ energy. > > > > Mark > > > > On Fri, 17 Nov 2017 21:06 Faezeh Pousaneh <fpoosa...@gmail.com> wrote: > > > >> I have 2 questions please. They seem evident, but I need to be sure to > >> solve my simulation problem: > >> > >> 1- Does being a virtual site (charge, no mass) or a normal atom, > effects on > >> its LJ interaction energies with rest of system? > >> > >> 2- Does adding a dummy massive site (no charge, only mass) to atoms of > >> mono-atomic system, influences on the LJ energy of whole system? > >> > >> Best regards > >> -- > >> Gromacs Users mailing list > >> > >> * Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > >> posting! > >> > >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > >> * For (un)subscribe requests visit > >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > >> send a mail to gmx-users-requ...@gromacs.org. > >> > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.