Hi, Yes, the parsing of that file looks like it doesn't handle blank lines gracefully, at least. Use a text editor and clean things up. And make sure the file endings are unix style, e.g. with dos2unix if relevant.
Mark On Wed, Dec 20, 2017 at 7:57 AM Jefferies D.F. <[email protected]> wrote: > Out of curiosity, how did you manage to identify and subsequently remove > the extra space? I have been having similar problems and the tools I've > used haven't fixed this problem. > > Thanks, > ________________________________________ > From: [email protected] [ > [email protected]] on behalf of > [email protected] [[email protected]] > Sent: Tuesday, December 19, 2017 6:21 PM > To: [email protected] > Subject: Re: [gmx-users] Umbrella sampling > > ----- Message from Dhaniram Mahato <[email protected]> --------- > Date: Tue, 19 Dec 2017 21:30:05 +0800 > From: Dhaniram Mahato <[email protected]> > Reply-To: [email protected] > Subject: Re: [gmx-users] Umbrella sampling > To: [email protected] > > > Hi, > > > > There could be format problem. You can create your own .dat files by > > typing > > it. You have probably copied it from somewhere. I hope it will work then. > > > > > > https://mailman-1.sys.kth.se/pipermail/gromacs.org_gmx-users/2015-April/096839.html > > > > Thanks > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests > > visithttps://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users > > or send a mail to [email protected]. > > Hii > I have solved the problem. It was just because of one extra space added in > the tpr-files.dat file. Now its running properly. > > ----- End message from Dhaniram Mahato <[email protected]> ----- > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to [email protected]. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to [email protected]. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
