Hi, Assuming the other test binary has the same behaviour (succeeds when run manually), then the build is working correctly and you could install it for general use. But I suspect its performance will suffer from whatever is causing the slowdown (e.g. compare with old numbers). That's not really a topic for this list, however.
Mark On Thu, Feb 8, 2018 at 6:47 PM Alex <nedoma...@gmail.com> wrote: > Are you suggesting that i should accept these results and install the 2018 > version? > > Thanks, > > Alex > > On Thu, Feb 8, 2018 at 10:43 AM, Mark Abraham <mark.j.abra...@gmail.com> > wrote: > > > Hi, > > > > PATH doesn't matter, only what ldd thinks matters. > > > > I have opened https://redmine.gromacs.org/issues/2405 to address that > the > > implementation of these tests are perhaps proving more pain than > usefulness > > (from this thread and others I have seen). > > > > Mark > > > > On Thu, Feb 8, 2018 at 6:41 PM Alex <nedoma...@gmail.com> wrote: > > > > > That is quite weird. We found that I have PATH values pointing to the > old > > > gmx installation while running these tests. Do you think that could > cause > > > issues? > > > > > > Alex > > > > > > On Thu, Feb 8, 2018 at 10:36 AM, Mark Abraham < > mark.j.abra...@gmail.com> > > > wrote: > > > > > > > Hi, > > > > > > > > Great. The manual run took 74.5 seconds, failing the 30 second > timeout. > > > So > > > > the code is fine. > > > > > > > > But you have some crazy large overhead going on - gpu_utils-test runs > > in > > > 7s > > > > on my 2013 desktop with CUDA 9.1. > > > > > > > > Mark > > > > > > > > On Thu, Feb 8, 2018 at 6:29 PM Alex <nedoma...@gmail.com> wrote: > > > > > > > > > uh, no sir. > > > > > > > > > > > 9/39 Test #9: GpuUtilsUnitTests ................***Timeout > 30.43 > > > sec > > > > > > > > > > > > > > > On Thu, Feb 8, 2018 at 10:25 AM, Mark Abraham < > > > mark.j.abra...@gmail.com> > > > > > wrote: > > > > > > > > > > > Hi, > > > > > > > > > > > > Those all succeeded. Does make check now also succeed? > > > > > > > > > > > > Mark > > > > > > > > > > > > On Thu, Feb 8, 2018 at 6:24 PM Alex <nedoma...@gmail.com> wrote: > > > > > > > > > > > > > Here you are: > > > > > > > > > > > > > > [==========] Running 35 tests from 7 test cases. > > > > > > > [----------] Global test environment set-up. > > > > > > > [----------] 7 tests from HostAllocatorTest/0, where TypeParam > = > > > int > > > > > > > [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks > > > > > > > [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (5457 > > ms) > > > > > > > [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocato > > > > > > rAlwaysWorks > > > > > > > [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocato > > > > > > rAlwaysWorks > > > > > > > (2861 ms) > > > > > > > [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork > > > > > > > [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork > > (3254 > > > > ms) > > > > > > > [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCalling > > > > Reserve > > > > > > > [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCalling > > > > Reserve > > > > > > > (2221 ms) > > > > > > > [ RUN ] HostAllocatorTest/0.TransfersWithPinningWorkWithCu > > da > > > > > > > [ OK ] HostAllocatorTest/0.TransfersWithPinningWorkWithCu > > da > > > > (3801 > > > > > > ms) > > > > > > > [ RUN ] > > > HostAllocatorTest/0.ManualPinningOperationsWorkWithCuda > > > > > > > [ OK ] > > > HostAllocatorTest/0.ManualPinningOperationsWorkWithCuda > > > > > > (2157 > > > > > > > ms) > > > > > > > [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory > > > > > > > [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory > > (2179 > > > > ms) > > > > > > > [----------] 7 tests from HostAllocatorTest/0 (21930 ms total) > > > > > > > > > > > > > > [----------] 7 tests from HostAllocatorTest/1, where TypeParam > = > > > > float > > > > > > > [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks > > > > > > > [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (2739 > > ms) > > > > > > > [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocato > > > > > > rAlwaysWorks > > > > > > > [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocato > > > > > > rAlwaysWorks > > > > > > > (2731 ms) > > > > > > > [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork > > > > > > > [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork > > (3281 > > > > ms) > > > > > > > [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCalling > > > > Reserve > > > > > > > [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCalling > > > > Reserve > > > > > > > (2164 ms) > > > > > > > [ RUN ] HostAllocatorTest/1.TransfersWithPinningWorkWithCu > > da > > > > > > > [ OK ] HostAllocatorTest/1.TransfersWithPinningWorkWithCu > > da > > > > (3908 > > > > > > ms) > > > > > > > [ RUN ] > > > HostAllocatorTest/1.ManualPinningOperationsWorkWithCuda > > > > > > > [ OK ] > > > HostAllocatorTest/1.ManualPinningOperationsWorkWithCuda > > > > > > (2202 > > > > > > > ms) > > > > > > > [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory > > > > > > > [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory > > (2261 > > > > ms) > > > > > > > [----------] 7 tests from HostAllocatorTest/1 (19287 ms total) > > > > > > > > > > > > > > [----------] 7 tests from HostAllocatorTest/2, where TypeParam > = > > > > > > > gmx::BasicVector<float> > > > > > > > [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks > > > > > > > [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (2771 > > ms) > > > > > > > [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocato > > > > > > rAlwaysWorks > > > > > > > [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocato > > > > > > rAlwaysWorks > > > > > > > (2846 ms) > > > > > > > [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork > > > > > > > [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork > > (3283 > > > > ms) > > > > > > > [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCalling > > > > Reserve > > > > > > > [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCalling > > > > Reserve > > > > > > > (2131 ms) > > > > > > > [ RUN ] HostAllocatorTest/2.TransfersWithPinningWorkWithCu > > da > > > > > > > [ OK ] HostAllocatorTest/2.TransfersWithPinningWorkWithCu > > da > > > > (3833 > > > > > > ms) > > > > > > > [ RUN ] > > > HostAllocatorTest/2.ManualPinningOperationsWorkWithCuda > > > > > > > [ OK ] > > > HostAllocatorTest/2.ManualPinningOperationsWorkWithCuda > > > > > > (2232 > > > > > > > ms) > > > > > > > [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory > > > > > > > [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory > > (2164 > > > > ms) > > > > > > > [----------] 7 tests from HostAllocatorTest/2 (19261 ms total) > > > > > > > > > > > > > > [----------] 3 tests from AllocatorTest/0, where TypeParam = > > > > > > > gmx::Allocator<float, gmx::HostAllocationPolicy> > > > > > > > [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAli > > gnment > > > > > > > [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAli > > gnment > > > (0 > > > > > ms) > > > > > > > [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithA > > lignment > > > > > > > [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithA > > lignment > > > > (0 > > > > > > ms) > > > > > > > [ RUN ] > > > AllocatorTest/0.VectorAllocatesAndReservesWithAlignment > > > > > > > [ OK ] > > > AllocatorTest/0.VectorAllocatesAndReservesWithAlignment > > > > (0 > > > > > > ms) > > > > > > > [----------] 3 tests from AllocatorTest/0 (0 ms total) > > > > > > > > > > > > > > [----------] 3 tests from AllocatorTest/1, where TypeParam = > > > > > > > gmx::Allocator<int, gmx::HostAllocationPolicy> > > > > > > > [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAli > > gnment > > > > > > > [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAli > > gnment > > > (0 > > > > > ms) > > > > > > > [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithA > > lignment > > > > > > > [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithA > > lignment > > > > (0 > > > > > > ms) > > > > > > > [ RUN ] > > > AllocatorTest/1.VectorAllocatesAndReservesWithAlignment > > > > > > > [ OK ] > > > AllocatorTest/1.VectorAllocatesAndReservesWithAlignment > > > > (0 > > > > > > ms) > > > > > > > [----------] 3 tests from AllocatorTest/1 (0 ms total) > > > > > > > > > > > > > > [----------] 3 tests from AllocatorTest/2, where TypeParam = > > > > > > > gmx::Allocator<gmx::BasicVector<float>, > > gmx::HostAllocationPolicy> > > > > > > > [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAli > > gnment > > > > > > > [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAli > > gnment > > > (0 > > > > > ms) > > > > > > > [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithA > > lignment > > > > > > > [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithA > > lignment > > > > (0 > > > > > > ms) > > > > > > > [ RUN ] > > > AllocatorTest/2.VectorAllocatesAndReservesWithAlignment > > > > > > > [ OK ] > > > AllocatorTest/2.VectorAllocatesAndReservesWithAlignment > > > > (0 > > > > > > ms) > > > > > > > [----------] 3 tests from AllocatorTest/2 (0 ms total) > > > > > > > > > > > > > > [----------] 5 tests from PinnedMemoryCheckerTest > > > > > > > [ RUN ] PinnedMemoryCheckerTest. > > DefaultContainerIsRecognized > > > > > > > [ OK ] PinnedMemoryCheckerTest. > > DefaultContainerIsRecognized > > > > (3248 > > > > > > ms) > > > > > > > [ RUN ] PinnedMemoryCheckerTest. > > NonpinnedContainerIsRecognized > > > > > > > [ OK ] PinnedMemoryCheckerTest. > > NonpinnedContainerIsRecognized > > > > > > (2752 > > > > > > > ms) > > > > > > > [ RUN ] > PinnedMemoryCheckerTest.PinnedContainerIsRecognized > > > > > > > [ OK ] > PinnedMemoryCheckerTest.PinnedContainerIsRecognized > > > > (2709 > > > > > > ms) > > > > > > > [ RUN ] PinnedMemoryCheckerTest.DefaultCBufferIsRecognized > > > > > > > [ OK ] PinnedMemoryCheckerTest.DefaultCBufferIsRecognized > > > > (2675 > > > > > > ms) > > > > > > > [ RUN ] PinnedMemoryCheckerTest.PinnedCBufferIsRecognized > > > > > > > [ OK ] PinnedMemoryCheckerTest.PinnedCBufferIsRecognized > > > (2686 > > > > > ms) > > > > > > > [----------] 5 tests from PinnedMemoryCheckerTest (14071 ms > > total) > > > > > > > > > > > > > > [----------] Global test environment tear-down > > > > > > > [==========] 35 tests from 7 test cases ran. (74549 ms total) > > > > > > > [ PASSED ] 35 tests. > > > > > > > > > > > > > > > > > > > > > On Thu, Feb 8, 2018 at 10:00 AM, Szilárd Páll < > > > > pall.szil...@gmail.com> > > > > > > > wrote: > > > > > > > > > > > > > > > It might help to know which of the unit test(s) in that group > > > > stall? > > > > > > Can > > > > > > > > you run it manually (bin/gpu_utils-test) and report back the > > > > standard > > > > > > > > output? > > > > > > > > > > > > > > > > > > > > > > > > -- > > > > > > > > Szilárd > > > > > > > > > > > > > > > > On Thu, Feb 8, 2018 at 3:56 PM, Alex <nedoma...@gmail.com> > > > wrote: > > > > > > > > > > > > > > > > > Nope, still persists after reboot and no other jobs > running: > > > > > > > > > 9/39 Test #9: GpuUtilsUnitTests > ................***Timeout > > > > 30.59 > > > > > > sec > > > > > > > > > > > > > > > > > > Any additional suggestions? > > > > > > > > > > > > > > > > > > -- > > > > > > > > > Gromacs Users mailing list > > > > > > > > > > > > > > > > > > * Please search the archive at > > http://www.gromacs.org/Support > > > > > > > > > /Mailing_Lists/GMX-Users_List before posting! > > > > > > > > > > > > > > > > > > * Can't post? 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