Hello Elton,
Thanks a lot for your help! I just tried to load a binutils library (it
was installed on the cluster) and install Gromacs 2018 again,
it works now!
All the best,
Qinghua
On 02/09/2018 11:33 PM, Elton Carvalho wrote:
If you are in a hurry, you can download the binutils package from here
https://www.gnu.org/software/binutils/ and compile it on your own, setting
the PREFIX to a directory in your home, then use $PATH to make your binary
the highest priority.
Cheers,
Elton
On Fri, Feb 9, 2018 at 8:17 PM, Qinghua Liao <scorpio.l...@gmail.com> wrote:
Hello Elton,
Thanks a lot for your information, I already sent an e-mail to the
administrator,
hopefully they will fix it.
All the best,
Qinghua
On 02/09/2018 08:03 PM, Elton Carvalho wrote:
Hello, Qinghua,
The error message refers to the standard library. I believe the package
that provides this in ubuntu is glibc. Check that it's a current enough
version.
Another thing is that the liker (ld) needs to support C++11. That's the
binutils package. I've had success with version 2.29. Not sure which is
the
lowest version required.
Good luck,
Elton
On Fri, Feb 9, 2018 at 12:25 PM, Qinghua Liao <scorpio.l...@gmail.com>
wrote:
Dear GMX developers,
I am trying to install Gromacs2018 with cuda on clusters, the
installation
was successful on one cluster,
but failed on the other cluster. I guess there might be some library
missing on the other cluster.
For the succeeded one, the operating system is openSUSE 42.2 (GNU/Linux
4.4.27-2-default), the compilers are gcc and c++ 4.8.5,
the CUDA version is 9.0.176, the MPI is openMPI 1.10.3
For the failed one, the operating system is Ubuntu 16.04.3 (GNU/Linux
4.4.0-109-generic x86_64), I tried CUDA 9.1.85 and 9.0.176,
together with gcc/c++ version 6.4, icc/icpc 2017.4, all were failed. The
error is the same:
-- Performing Test CXX11_STDLIB_PRESENT
-- Performing Test CXX11_STDLIB_PRESENT - Failed
CMake Error at cmake/gmxTestCXX11.cmake:210 (message):
This version of GROMACS requires C++11-compatible standard library.
Please
use a newer compiler, and/or a newer standard library, or use the
GROMACS
5.1.x release. Consult the installation guide for details before
upgrading
components.
Call Stack (most recent call first):
CMakeLists.txt:168 (gmx_test_cxx11)
Here is my command:
CC=gcc CXX=c++ .. -DGMX_BUILD_OWN_FFTW=ON -DGMX_GPU=ON
-DCMAKE_INSTALL_PREFIX=/--PATH--/Programs/Gromacs2018
I am confused here that the old compilers worked but the new ones did
not,
while the error message suggests to use newer compilers.
Could some one help me with fixing it? Thanks a lot!
All the best,
Qinghua
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