Also, can the "map file format" page be updated with "chain separator"? http://manual.gromacs.org/online/map.html
9 ~ Coil 1 1 1 E B-Sheet 1 0 0 B B-Bridge 0 0 0 S Bend 0 0.5 0 T Turn 1 1 0 H A-Helix 0 0 1 I 5-Helix 0.5 0 0.5 G 3-Helix 0.5 0.5 0.5 = Chain_Separator 0.9 0.9 0.9 ------------------ Original ------------------ From: "ZHANG Cheng"<272699...@qq.com>; Date: Fri, Apr 6, 2018 10:13 PM To: "gromacs.org_gmx-users"<gromacs.org_gmx-users@maillist.sys.kth.se>;"ZHANG Cheng"<272699...@qq.com>; Subject: chain separator issue for the "gmx do_dssp": do NOT need to provide a "ss.map" file I would like to share my answer for chain separator issue for the "gmx do_dssp". Millions of thanks to Carsten! The "gmx do_dssp" will output an additional line as chain separator between two chains. We do NOT need to provide a "ss.map" file in our working directory, and the command will find the default "ss.map" file automatically, and the ss.xpm file will have a line of "========" as the chain separator. I created my own ss.map file based on http://manual.gromacs.org/online/map.html, and got the "~~~~~~~~~~" as chain separator, which is the same as coils. So do not do this. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
