Dear Gromacs users, I have a bilayer in xy plane. I tried to solvate the bilayer (sur_bilayer.pdb) with water molecules using gmx solvate. I used the command; gmx solvate -cp sur_bilayer.pdb -maxsol 28197 -o sur_water_bilayer.pdb
However, water molecules are not distributed in the hydrophilic layers in the xy plane as I wanted. How can I solve this problem? Thank you. <name.surn...@monash.edu> <name.surn...@monash.edu> -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
