hi, to calculate the distance between the center of geometry of two proteins, i am using this command g_dist -f md_0_1_noPBC.xtc -s dynamic.tpr -n index.ndx -o distave.xvg -select 'cog of group "Chain_A" plus cog of group "Chain_B"' Invalid command line argument: -select here in this index file the two chain group name Chain_A and Chain_B how i will select the two chain.
thanking you shahee islam university of calcutta -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
