hi, i am following this tutorial http://cgmartini.nl/index.php/tutorials-general-introduction/proteins. afrter converting the coarse grained protein to all atom structure by charmm force field,i have gotten the all atom gro file.now i want to analyse the secondary structure of thih gro file. when i am using this command do_dssp -s aa_charmm.gro -n index1.ndx -f dynamic.xtc -sc scount.xvg -o ss.xpm -dt 10 the error is Fatal error: Failed to execute command: /usr/local/bin/dssp -na ddVp6nYX ddensUfd > /dev/null 2> /dev/null thanking you shahee -- Gromacs Users mailing list
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