Dear all, I want to make two covalent bonds between ligands and two bases of DNA . For this I want to generate amber parameters of covalently bonded ligands for running in Gromacs. In normal case without co-valent bonds we are able to generate parameters. but for two co-valentely bonded bases we are unable. We have found some tutorials for normal one but not for two covalently bonded one. If some one have any idea then hoping response from his side.
-- *With Best-Rakesh Kumar Mishra* * (RA)CSD SINP Kolkata, India* *E-mail - rakesh.mis...@saha.ac.in <rakesh.mis...@saha.ac.in> * *Phone n. +91 9473662491, +918777496532* -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
