Also i have used this command G_mindist -f md2.gro -s -n -or (select Pr-H and tube)
Dies it calculate minimum distabce of non-hydrogen atom of each residue with tube closest atom or COM of nanotube? On Mon, 31 Dec 2018, 03:03 rose rahmani <rose.rhm...@gmail.com wrote: > Hi, > > Does g_mindist calculates distances between COM of two groups? > > I want twi calculate dustances between any atom of protein-H and nanotube > surface. So if g_mindist shows for example 0.9nm is it really 0.9-0.7(tube > radius)=0.2 nm from surface? > > Best > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.