> Message: 4 > Date: Wed, 9 Jan 2019 11:59:31 +0100 > From: Tamas Hegedus <ta...@hegelab.org> > To: gromacs.org_gmx-users@maillist.sys.kth.se > Subject: Re: [gmx-users] ramachandran plot > Message-ID: <563a0c65-532e-a47d-fdf7-5046a062c...@hegelab.org> > Content-Type: text/plain; charset=utf-8; format=flowed
Hi Tamas Thank you so much for your suggestion. I will check that. Just to know one more thing, is there any program to know only number of residues in the allowed and favoured region in the output? Thank You > Hi, > > I use the python MDAnalysis packages for this. > > https://github.com/MDAnalysis/mdanalysis/issues/1335 > > https://www.mdanalysis.org/mdanalysis/documentation_pages/analysis/dihedrals.html > > Have a nice day, Tamas > > On 01/09/2019 10:30 AM, za...@tezu.ernet.in wrote: >> Dear Users >> >> Can anyone suggest me any available tool to analyze ramachandran plot >> timewise for a trajectory? >> >> Thank You >> >> Regards >> Zaved Hazarika >> Research Scholar >> Dept. Of Molecular Biology and Biotechnology, >> Tezpur University, >> India >> >> >> >> >> >> >> >> * * * D I S C L A I M E R * * * >> This e-mail may contain privileged information and is intended solely >> for the individual named. If you are not the named addressee you should >> not disseminate, distribute or copy this e-mail. Please notify the >> sender immediately by e-mail if you have received this e-mail in error >> and destroy it from your system. Though considerable effort has been >> made to deliver error free e-mail messages but it can not be guaranteed >> to be secure or error-free as information could be intercepted, >> corrupted, lost, destroyed, delayed, or may contain viruses. The >> recipient must verify the integrity of this e-mail message. >> > > > -- > Tamas Hegedus, PhD > Senior Research Fellow > Department of Biophysics and Radiation Biology > Semmelweis University | phone: (36) 1-459 1500/60233 > Tuzolto utca 37-47 | mailto:ta...@hegelab.org > Budapest, 1094, Hungary | http://www.hegelab.org > > > ------------------------------ Regards Zaved Hazarika Research Scholar Dept. Of Molecular Biology and Biotechnology, Tezpur University, India * * * D I S C L A I M E R * * * This e-mail may contain privileged information and is intended solely for the individual named. If you are not the named addressee you should not disseminate, distribute or copy this e-mail. Please notify the sender immediately by e-mail if you have received this e-mail in error and destroy it from your system. Though considerable effort has been made to deliver error free e-mail messages but it can not be guaranteed to be secure or error-free as information could be intercepted, corrupted, lost, destroyed, delayed, or may contain viruses. The recipient must verify the integrity of this e-mail message. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
