Hello Dear All I did a simulation of protein-protein interaction. I want to obtain a distance residue between the two proteins. In the Gromacs tutorial has been said to calculate of distance for protein-ligand whereas I want to calculate of distance for protein-protein. The command of protein-ligand in the Gromacs tutorial: gmx distance -s md_0_10.tpr -f md_0_10_center.xtc -select 'resname "JZ4" and name OAB plus resid 102 and name OE1' -oall can I use resid instead of resname for protein because I have two proteins? I would be grateful if you could say command of distance for residues between two proteins. Thank's a lot. -- Gromacs Users mailing list
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