Thank you so much Mr Mat. That was very usual.
On Sat, Mar 16, 2019 at 10:27 PM Mateusz Bieniek <bieniek...@gmail.com> wrote: > Hi Rahul, > > I've run into a similar issue a year ago. It is possible to configure gmx > with the extra configuration file (as described in the documentation) to > get this right. > > However, I found it to be archaic and wrote my own quick DSSP visualiser in > matplotlib. > > I am planning to improve the code and release it with the next paper, but > for now I attach the simple one. > > Note that not all dssp letters/secondary structures have been added, so you > might need to add more colors: > colors = { > coil_char: "#FFFFFF", > bsheet_char: "#FF0000", > bbridge_char: "#000000", > bend_char: "#008000", > turn_char: "#FFFF00", > three_helix_char: "#808080", > } > > > Hope this helps, Mat > > > > > On Fri, 15 Mar 2019 at 17:06, RAHUL SURESH <drrahulsur...@gmail.com> > wrote: > > > Hi Users. > > > > I have Performed dssp for 1000ns simulation. On converting the xpm to > eps, > > the axis are not visible to any extent. I have tried with different > values > > and I couldn't obtain a good image. Can anyone pass possible suitable > > commands for long simulations to obtain a satisfactory image? > > > > -- > > *Regards,* > > *Rahul * > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > > send a mail to gmx-users-requ...@gromacs.org. > > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. -- *Regards,* *Rahul * -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.