Hi, I am trying to crod snapshots with multiple copies of a molecule. When I run gmx insert-molecules and I have a box of a certain size, does it make sure that there is no overlap of molecules even considering pbc? What I mean by this is if I do a trjconv on the resulting crowded snapshot, using -pbc atom, will any of the atoms/molecules overlap? Or maybe another way of saying it is, if a molecule, when places, falls partially outside the box does it ensure that another molecule wouldn't overlap with the periodic image of that first molecule?
Hope this question makes sense -- thanks! Mala -- Mala L. Radhakrishnan Associate Professor of Chemistry Director, Biochemistry Program Wellesley College 106 Central Street Wellesley, MA 02481 (781)283-2981 -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.