hi users, I generated ligand topology containing complex metals using ATB server, developed using GROMOS54A7 modified forcefield. Then i used Charmm gui for protein embedding in lipid bilayer followed by catenation of both .gro files. System was solvated but during ion addition it couldnot recognize ligand metal atoms probably because of unmodified charmm 36m which doesnt have parameters for metals. I want to use ATB generated modified gromos54A7 instead. How can I generate gromac topology for the combined system so that i could use that with modified forcefield? -- Gromacs Users mailing list
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