i am so sorry for the late reply. I have applied both of your suggestion but still it does not working. syntax error invalid selection 'POPG and name P* N* within 1.0 of Protein' can you please guide me to solve the error.
On Fri, Oct 25, 2019 at 3:39 PM Justin Lemkul <jalem...@vt.edu> wrote: > > > On 10/25/19 5:38 AM, Peter Stern wrote: > > You are probably causing your command to run in the background with > “&”. Try using “and” instead. > > In addition to this, the selection string needs to be enclosed by single > quotes. > > -Justin > > > Peter > > > > Sent from my iPhone > > > >> On Oct 25, 2019, at 11:45 AM, SHAHEE ISLAM <islamsha...@gmail.com> > wrote: > >> > >> Hi, > >> I am trying to calculate the angle between P and N vector of my lipid > >> (popc+popg) with regards to the z axis to see how the protein is > affecting > >> the membrane. I am using this command, but it does not working > >> gmx select -f *.xtc -s *.tpr -select POPG & name P* N* within 1.0 of > >> Protein -oi number.dat > >> but the problem is, when the command is running only > >> gmx select -f *.xtc -s *.tpr -select POPG > >> this command. > >> Can anyone please guide me what i am doing wrong. > >> Thanking you > >> Shahee > >> -- > >> Gromacs Users mailing list > >> > >> * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > >> > >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > >> * For (un)subscribe requests visit > >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > > -- > ================================================== > > Justin A. Lemkul, Ph.D. > Assistant Professor > Office: 301 Fralin Hall > Lab: 303 Engel Hall > > Virginia Tech Department of Biochemistry > 340 West Campus Dr. > Blacksburg, VA 24061 > > jalem...@vt.edu | (540) 231-3129 > http://www.thelemkullab.com > > ================================================== > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
