thank you so much for your guidance. On Wed, Nov 6, 2019 at 6:41 PM Justin Lemkul <jalem...@vt.edu> wrote:
> > > On 11/6/19 8:03 AM, SHAHEE ISLAM wrote: > > hi, > > i want to calculate the cross sectional area of protein on the lipid > layer. > > Can anyone please guide me how can i do that. By using gmx sasa i can > > calculate the surface area of protein. What should i choose so that i can > > calculate cross section area of protein on lipid bilayer. > > There is no GROMACS program that will do this. However, you can get this > quantity with GridMat-MD: https://github.com/jalemkul/gridmat-md > > -Justin > > -- > ================================================== > > Justin A. Lemkul, Ph.D. > Assistant Professor > Office: 301 Fralin Hall > Lab: 303 Engel Hall > > Virginia Tech Department of Biochemistry > 340 West Campus Dr. > Blacksburg, VA 24061 > > jalem...@vt.edu | (540) 231-3129 > http://www.thelemkullab.com > > ================================================== > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
