Hello Justin, thank you for the response. In that case I should use "frequency" if I plan to take it the way it is.
Thanks, On Fri, Nov 29, 2019 at 4:25 PM Justin Lemkul <jalem...@vt.edu> wrote: > > > On 11/29/19 7:18 AM, Christian Blau wrote: > > Hello Lalehan, > > > > > > a.u. stands for "arbitrary units". > > > > The rmsd-dist contains a histogram over the distribution of rmsd > > values, you can read the a.u. as counts per length-interval. > > > > I would suggest that all histograms that GROMACS produces actually be > labeled reasonably in the code - using a.u. is itself arbitrary because > it has multiple possible meanings. If it's a raw histogram, we should be > using "Frequency" and if normalized, "Probability." > > -Justin > > -- > ================================================== > > Justin A. Lemkul, Ph.D. > Assistant Professor > Office: 301 Fralin Hall > Lab: 303 Engel Hall > > Virginia Tech Department of Biochemistry > 340 West Campus Dr. > Blacksburg, VA 24061 > > jalem...@vt.edu | (540) 231-3129 > http://www.thelemkullab.com > > ================================================== > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.