This bug was fixed in the package fwupdate - 0.5-2ubuntu7

---------------
fwupdate (0.5-2ubuntu7) xenial; urgency=medium

  * Redo patch series. (LP: #1730343)
    - Backport ALL patches to EFI application up through the "9" release.
    - The last two attempts have introduced unobvious bugs due to nature
      of cherry picking.
    - The "9" release of the EFI application however has been stable in
      future releases of Ubuntu.

 -- Mario Limonciello <mario.limoncie...@dell.com>  Mon, 15 Jan 2018
22:59:48 -0600

** Changed in: fwupdate (Ubuntu Xenial)
       Status: Fix Committed => Fix Released

** Changed in: fwupdate-signed (Ubuntu Xenial)
       Status: Fix Committed => Fix Released

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https://bugs.launchpad.net/bugs/1730343

Title:
  firmware update breaks Ubuntu

Status in Fwupd:
  Fix Released
Status in fwupd package in Ubuntu:
  Invalid
Status in fwupdate package in Ubuntu:
  Fix Released
Status in fwupdate-signed package in Ubuntu:
  Fix Released
Status in fwupd source package in Xenial:
  Invalid
Status in fwupdate source package in Xenial:
  Fix Released
Status in fwupdate-signed source package in Xenial:
  Fix Released
Status in fwupd source package in Zesty:
  Invalid
Status in fwupdate source package in Zesty:
  Won't Fix
Status in fwupdate-signed source package in Zesty:
  Won't Fix
Status in fwupd source package in Artful:
  Invalid
Status in fwupdate source package in Artful:
  Fix Released
Status in fwupdate-signed source package in Artful:
  Fix Released
Status in fwupd source package in Bionic:
  Invalid
Status in fwupdate source package in Bionic:
  Fix Released
Status in fwupdate-signed source package in Bionic:
  Fix Released

Bug description:
  [Impact]

   * A few users have reported instances of not being able to boot into Ubuntu 
after a firmware update.  This is suspected to be caused by a missing Ubuntu 
boot entry.
   * fwupdate adds an entry for doing the update to the BootOrder, but doesn't 
remove it.  BIOS auto-creation for making boot entries typically depends on the 
BootOrder being empty.

  
  * This affects all releases of fwupdate since the code to add to BootOrder was
  also backported into the Ubuntu 16.04 release of fwupdate (0.5-2ubuntu5)

  [Test Case]

  * Perform a UEFI BIOS update after installing this package.
  * Ensure the system boots and there is no longer a "Linux Firmware Updater" 
entry
  present in the efibootmgr -v output.

  
  [Regression Potential] 

  * Regressions are possible to manifest if any BIOS depends on the
  previous behavior.

  * The fixes that were backported have been upstream for a few months and no
  concerns have been raised upstream from them.

  [Other Info]
  Two users have reported that fwupd breaks their Ubuntu installation because 
the "Ubuntu" EFI boot option disappears after an update.
  Upstream issue: https://github.com/rhboot/fwupdate/issues/86

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