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new 0574446 gnu: Add r-bisquerna.
0574446 is described below
commit 0574446be82ef54b925441e4283bf754a86918a9
Author: Roel Janssen <r...@gnu.org>
AuthorDate: Wed Sep 9 17:02:55 2020 +0200
gnu: Add r-bisquerna.
* gnu/packages/bioinformatics.scm (r-bisquerna): New variable.
---
gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f8792ef..9f2fd86 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7923,6 +7923,31 @@ manipulating genomic intervals and variables defined
along a genome.")
on Bioconductor or which replace R functions.")
(license license:artistic2.0)))
+(define-public r-bisquerna
+ (package
+ (name "r-bisquerna")
+ (version "1.0.4")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "BisqueRNA" version))
+ (sha256
+ (base32
+ "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2"))))
+ (properties `((upstream-name . "BisqueRNA")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-limsolve" ,r-limsolve)))
+ (home-page "https://www.biorxiv.org/content/10.1101/669911v1";)
+ (synopsis "Decomposition of Bulk Expression with Single-Cell Sequencing")
+ (description "This package provides tools to accurately estimate cell type
+abundances from heterogeneous bulk expression. A reference-based method
+utilizes single-cell information to generate a signature matrix and
+transformation of bulk expression for accurate regression based estimates.
+A marker-based method utilizes known cell-specific marker genes to measure
+relative abundances across samples.")
+ (license license:gpl3)))
+
(define-public r-annotationdbi
(package
(name "r-annotationdbi")
