rekado pushed a commit to branch wip-r
in repository guix.
commit 727515525a2521aa9afd930e13020350b52c4439
Author: Roel Janssen <[email protected]>
AuthorDate: Wed Nov 18 16:48:25 2020 +0100
gnu: r-diffbind: Update to 3.0.6.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.6.
[propagated-inputs]: Add r-apeglm, r-ashr, and r-greylistchip; remove
r-edger.
---
gnu/packages/bioconductor.scm | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a9b153d..ea2ec0b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1687,29 +1687,31 @@ signal in the input, that lead to spurious peaks during
peak calling.")
(define-public r-diffbind
(package
(name "r-diffbind")
- (version "3.0.0")
+ (version "3.0.6")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DiffBind" version))
(sha256
(base32
- "0dd5hyc5ky3znli1q1y4c7bzkc00b2zxdmgxk2qm8xm1zar637rr"))))
+ "09y309mxnw5li1c1wkz02isvx8pfgvb9aafmrl6l35fcx1rsiqwz"))))
(properties `((upstream-name . "DiffBind")))
(build-system r-build-system)
(inputs
`(("zlib" ,zlib)))
(propagated-inputs
`(("r-amap" ,r-amap)
+ ("r-apeglm" ,r-apeglm)
+ ("r-ashr" ,r-ashr)
("r-biocparallel" ,r-biocparallel)
("r-deseq2" ,r-deseq2)
("r-dplyr" ,r-dplyr)
- ("r-edger" ,r-edger)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-ggrepel" ,r-ggrepel)
("r-gplots" ,r-gplots)
+ ("r-greylistchip" ,r-greylistchip)
("r-iranges" ,r-iranges)
("r-lattice" ,r-lattice)
("r-limma" ,r-limma)
