rekado pushed a commit to branch master
in repository guix.
commit 2b224f904a18bd84080119ee57d4f2750a0da732
Author: zimoun <[email protected]>
AuthorDate: Fri Dec 4 05:07:38 2020 +0100
gnu: r-cytoml: Fix r-rhdf5libs linking.
* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
---
gnu/packages/bioconductor.scm | 11 +++++++++++
1 file changed, 11 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ce831af..2992045 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6426,6 +6426,17 @@ sequential way to mimic the manual gating strategy.")
"1d8x49aqc95x1vx456hya5r7mal80pj9l6wmr5x5pb5r8qyzz6yq"))))
(properties `((upstream-name . "CytoML")))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-linking
+ (lambda _
+ (substitute* "src/Makevars.in"
+ ;; This is to avoid having a plain directory on the list of
+ ;; libraries to link.
+ (("\\{h5lib\\}" match)
+ (string-append match "/libhdf5.a")))
+ #t)))))
(inputs
`(("libxml2" ,libxml2)))
(propagated-inputs
