rekado pushed a commit to branch master
in repository guix.
commit b72df3bbb3625261d6b344c232da3c0589a0f3b7
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Sat Dec 10 14:39:57 2022 +0100
gnu: python-dna-features-viewer: Update to 3.1.1.
* gnu/packages/bioinformatics.scm (python-dna-features-viewer):
Update to 3.1.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add build phase to fix a compatibility problem with biopython.
[propagated-inputs]: Add python-packaging.
---
gnu/packages/bioinformatics.scm | 23 ++++++++++++++++++-----
1 file changed, 18 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ea33311a2c..371bf1077a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -16597,18 +16597,31 @@ feature is fast retrieval of range queries into numpy
arrays.")
(define-public python-dna-features-viewer
(package
(name "python-dna-features-viewer")
- (version "3.0.3")
+ (version "3.1.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "dna_features_viewer" version))
(sha256
(base32
- "0vci6kg2id6r6rh3cifq7ccnh7j0mb8iqg3hji6rva0ayrdqzafc"))))
- (build-system python-build-system)
- (arguments '(#:tests? #false)) ; there are none
+ "10a5pmh73spdgfml88zjqg1rn2j2zdxn06ir8a5q3arspyqvyqcb"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:tests? #false ;there are none
+ #:phases
+ '(modify-phases %standard-phases
+ ;; See
https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer/issues/73
+ ;; and
https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer/pull/74
+ (add-after 'unpack 'fix-biopython-compatibility
+ (lambda _
+ (substitute* "dna_features_viewer/biotools.py"
+ (("zip\\(aa1 \\+ \"\\*\", aa3 \\+ \\[\"\\*\"\\]\\)")
+ "zip(aa1 + ('*',), aa3 + ('*',))")))))))
(propagated-inputs
- (list python-biopython python-matplotlib))
+ (list python-biopython
+ python-matplotlib
+ python-packaging))
(home-page
"https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer";)
(synopsis "Plot features from DNA sequences")
