rekado pushed a commit to branch master
in repository guix.
commit 23322c2de8565f4bfc6787f154d6ae2a078ba097
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Tue Dec 13 16:30:45 2022 +0100
gnu: tophat: Remove trailing #T from build phases and snippet.
* gnu/packages/bioinformatics.scm (tophat)[source]: Remove trailing #T from
snippet.
[arguments]: Remove trailing #T from build phases.
---
gnu/packages/bioinformatics.scm | 9 +++------
1 file changed, 3 insertions(+), 6 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1dae5982ea..8236708391 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2062,8 +2062,7 @@ genome (2.9 GB for paired-end).")
'(begin
;; Remove bundled SeqAn and samtools
(delete-file-recursively "src/SeqAn-1.4.2")
- (delete-file-recursively "src/samtools-0.1.18")
- #t))))
+ (delete-file-recursively "src/samtools-0.1.18")))))
(build-system gnu-build-system)
(arguments
'(#:parallel-build? #f ; not supported
@@ -2078,8 +2077,7 @@ genome (2.9 GB for paired-end).")
(string-join
(delete (string-append gcc "/include/c++")
(string-split (getenv "CPLUS_INCLUDE_PATH")
#\:))
- ":"))
- #t)))
+ ":")))))
(add-after 'unpack 'use-system-samtools
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "src/Makefile.in"
@@ -2099,8 +2097,7 @@ genome (2.9 GB for paired-end).")
"src/map2gtf.h"
"src/align_status.h")
(("#include <bam.h>") "#include <samtools/bam.h>")
- (("#include <sam.h>") "#include <samtools/sam.h>"))
- #t)))))
+ (("#include <sam.h>") "#include <samtools/sam.h>")))))))
(native-inputs
`(("gcc@5" ,gcc-5))) ;; doesn't build with later versions
(inputs
