rekado pushed a commit to branch master
in repository guix.
commit 27178151c3d0856edaf7de85fbfec2421656ea55
Author: Mădălin Ionel Patrașcu <[email protected]>
AuthorDate: Thu Feb 2 03:26:48 2023 +0100
gnu: Add r-glad.
* gnu/packages/bioconductor.scm (r-glad): New variable.
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1a7c53257b..703edb3524 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6145,6 +6145,30 @@ GenomicRanges package defines general purpose containers
for storing and
manipulating genomic intervals and variables defined along a genome.")
(license license:artistic2.0)))
+(define-public r-glad
+ (package
+ (name "r-glad")
+ (version "2.62.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GLAD" version))
+ (sha256
+ (base32
+ "0gb52ic5r6nkgm2ynm174vcvbmkbhhjgv71lsmxpxzcsb6rr7qj6"))))
+ (properties `((upstream-name . "GLAD")))
+ (build-system r-build-system)
+ (inputs (list gsl))
+ (propagated-inputs (list r-aws))
+ (native-inputs (list pkg-config))
+ (home-page "http://bioinfo.curie.fr";)
+ (synopsis "Gain and loss analysis of DNA")
+ (description
+ "This package helps with the analysis of array @acronym{CGH, comparative
+genomic hybridization} data by detecting of the breakpoints in the genomic
+profiles and assignment of a status (gain, normal or loss) to each chromosomal
+regions identified.")
+ (license license:gpl2)))
+
(define-public r-gostats
(package
(name "r-gostats")
