rekado pushed a commit to branch master
in repository guix.
commit d71605294fff1a12f3145fa4788da1556284c91c
Author: Ricardo Wurmus <[email protected]>
Date: Thu Nov 24 15:15:45 2016 +0100
gnu: Add r-wgcna.
* gnu/packages/bioinformatics.scm (r-wgcna): New variable.
---
gnu/packages/bioinformatics.scm | 36 ++++++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0b6fbe5..0b10b1b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7541,6 +7541,42 @@ characterization and visualization of a wide range of
mutational patterns
in SNV base substitution data.")
(license license:expat)))
+(define-public r-wgcna
+ (package
+ (name "r-wgcna")
+ (version "1.51")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "WGCNA" version))
+ (sha256
+ (base32
+ "0hzvnhw76vwg8bl8x368f0c5szpwb8323bmrb3bir93i5bmfjsxx"))))
+ (properties `((upstream-name . "WGCNA")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-doparallel" ,r-doparallel)
+ ("r-dynamictreecut" ,r-dynamictreecut)
+ ("r-fastcluster" ,r-fastcluster)
+ ("r-foreach" ,r-foreach)
+ ("r-go-db" ,r-go-db)
+ ("r-hmisc" ,r-hmisc)
+ ("r-impute" ,r-impute)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-preprocesscore" ,r-preprocesscore)))
+ (home-page
+
"http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/";)
+ (synopsis "Weighted correlation network analysis")
+ (description
+ "This package provides functions necessary to perform Weighted
+Correlation Network Analysis on high-dimensional data. It includes functions
+for rudimentary data cleaning, construction and summarization of correlation
+networks, module identification and functions for relating both variables and
+modules to sample traits. It also includes a number of utility functions for
+data manipulation and visualization.")
+ (license license:gpl2+)))
+
(define-public emboss
(package
(name "emboss")
