sharlatan pushed a commit to branch python-team
in repository guix.
commit a0859ffaca47d91678ba6e4710d1f61bca4aef8f
Author: Nicolas Graves <[email protected]>
AuthorDate: Mon Mar 31 08:18:39 2025 +0200
gnu: seqmagick: Update to 0.8.6-0.dee6ab9.
* gnu/packages/bioinformatics.scm (seqmagick): Update to 0.8.6-0.dee6ab9.
Signed-off-by: Sharlatan Hellseher <[email protected]>
---
gnu/packages/bioinformatics.scm | 44 ++++++++++++++++++++++-------------------
1 file changed, 24 insertions(+), 20 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d67f84101f..f7f3b9ef69 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12061,30 +12061,34 @@ bioinformatics file formats, sequence alignment, and
more.")
("bzip2" ,bzip2)))))
(define-public seqmagick
- (package
- (name "seqmagick")
- (version "0.8.4")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "seqmagick" version))
- (sha256
- (base32
- "0c6skyig8fyylnbj4597pjj9h0dn36rkxrhwd34yrsc6k6f7r8a0"))))
- (build-system pyproject-build-system)
- (inputs
- (list python-biopython python-pygtrie))
- (native-inputs
- (list python-pytest python-setuptools python-wheel))
- (home-page "https://github.com/fhcrc/seqmagick";)
- (synopsis "Tools for converting and modifying sequence files")
- (description
- "Bioinformaticians often have to convert sequence files between formats
+ (let ((commit "dee6ab9839cff317142e55678bb12c4c9ab2150f")
+ (revision "0"))
+ (package
+ (name "seqmagick")
+ (version (git-version "0.8.6" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/fhcrc/seqmagick";)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0syipb7m44s5bqrhs17bwr28svy2s83j8d93kbazav92jzszzsw4"))))
+ (build-system pyproject-build-system)
+ (inputs
+ (list python-biopython python-pygtrie))
+ (native-inputs
+ (list python-nose python-setuptools python-wheel))
+ (home-page "https://github.com/fhcrc/seqmagick";)
+ (synopsis "Tools for converting and modifying sequence files")
+ (description
+ "Bioinformaticians often have to convert sequence files between formats
and do little manipulations on them, and it's not worth writing scripts for
that. Seqmagick is a utility to expose the file format conversion in
BioPython in a convenient way. Instead of having a big mess of scripts, there
is one that takes arguments.")
- (license license:gpl3)))
+ (license license:gpl3))))
(define-public seqtk
(package
